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Clonal KEAP1 mutations with loss of heterozygosity share reduced immunotherapy efficacy and low immune cell infiltration in lung adenocarcinoma.
Scalera S, Ricciuti B, Mazzotta M, Calonaci N, Alessi JV, Cipriani L, Bon G, Messina B, Lamberti G, Di Federico A, Pecci F, Milite S, Krasniqi E, Barba M, Vici P, Vecchione A, De Nicola F, Ciuffreda L, Goeman F, Fanciulli M, Buglioni S, Pescarmona E, Sharma B, Felt KD, Lindsay J, Rodig SJ, De Maria R, Caravagna G, Cappuzzo F, Ciliberto G, Awad MM, Maugeri-Saccà M. Scalera S, et al. Among authors: caravagna g. Ann Oncol. 2023 Mar;34(3):275-288. doi: 10.1016/j.annonc.2022.12.002. Epub 2022 Dec 13. Ann Oncol. 2023. PMID: 36526124 Free article.
Pan-cancer landscape of AID-related mutations, composite mutations, and their potential role in the ICI response.
Hernández-Verdin I, Akdemir KC, Ramazzotti D, Caravagna G, Labreche K, Mokhtari K, Hoang-Xuan K, Peyre M, Bielle F, Touat M, Idbaih A, Duval A, Sanson M, Alentorn A. Hernández-Verdin I, et al. Among authors: caravagna g. NPJ Precis Oncol. 2022 Dec 1;6(1):89. doi: 10.1038/s41698-022-00331-2. NPJ Precis Oncol. 2022. PMID: 36456685 Free PMC article.
A Bayesian method to infer copy number clones from single-cell RNA and ATAC sequencing.
Patruno L, Milite S, Bergamin R, Calonaci N, D'Onofrio A, Anselmi F, Antoniotti M, Graudenzi A, Caravagna G. Patruno L, et al. Among authors: caravagna g. PLoS Comput Biol. 2023 Nov 2;19(11):e1011557. doi: 10.1371/journal.pcbi.1011557. eCollection 2023 Nov. PLoS Comput Biol. 2023. PMID: 37917660 Free PMC article.
Evolutionary and immune microenvironment dynamics during neoadjuvant treatment of oesophagael adenocarcinoma.
Barroux M, Househam J, Lakatos E, Ronel T, Baker AM, Salié H, Mossner M, Smith K, Kimberley C, Nowinski S, Berner A, Gunasri V, Jansen M, Caravagna G, Steiger K, Slotta-Huspenina J, Weichert W, Alberstmeier M, Chain B, Friess H, Bengsch B, Schmid R, Siveke J, Quante M, Graham T. Barroux M, et al. Among authors: caravagna g. Res Sq [Preprint]. 2023 Apr 13:rs.3.rs-2738048. doi: 10.21203/rs.3.rs-2738048/v1. Res Sq. 2023. PMID: 37090678 Free PMC article. Preprint.
42 results