Karplus M - Search Results

1

Trypsinogen-trypsin transition: a molecular dynamics study of induced conformational change in the activation domain.

Brünger AT, Huber R, Karplus M. Brünger AT, et al. Among authors: karplus m. Biochemistry. 1987 Aug 11;26(16):5153-62. doi: 10.1021/bi00390a039. Biochemistry. 1987. PMID: 3663651

2

Molecular dynamics: applications to proteins.

Karplus M, Brünger AT, Elber R, Kuriyan J. Karplus M, et al. Cold Spring Harb Symp Quant Biol. 1987;52:381-90. doi: 10.1101/sqb.1987.052.01.044. Cold Spring Harb Symp Quant Biol. 1987. PMID: 3454267 No abstract available.

3

Refinement of the solution structure of the DNA hexamer 5'd(GCATGC)2: combined use of nuclear magnetic resonance and restrained molecular dynamics.

Nilges M, Clore GM, Gronenborn AM, Brunger AT, Karplus M, Nilsson L. Nilges M, et al. Among authors: karplus m. Biochemistry. 1987 Jun 16;26(12):3718-33. doi: 10.1021/bi00386a068. Biochemistry. 1987. PMID: 3651407

4

Solution conformations of human growth hormone releasing factor: comparison of the restrained molecular dynamics and distance geometry methods for a system without long-range distance data.

Brünger AT, Clore GM, Gronenborn AM, Karplus M. Brünger AT, et al. Among authors: karplus m. Protein Eng. 1987 Oct-Nov;1(5):399-406. doi: 10.1093/protein/1.5.399. Protein Eng. 1987. PMID: 2854259

5

Polar hydrogen positions in proteins: empirical energy placement and neutron diffraction comparison.

Brünger AT, Karplus M. Brünger AT, et al. Among authors: karplus m. Proteins. 1988;4(2):148-56. doi: 10.1002/prot.340040208. Proteins. 1988. PMID: 3227015

6

Structure refinement of oligonucleotides by molecular dynamics with nuclear Overhauser effect interproton distance restraints: application to 5' d(C-G-T-A-C-G)2.

Nilsson L, Clore GM, Gronenborn AM, Brünger AT, Karplus M. Nilsson L, et al. Among authors: karplus m. J Mol Biol. 1986 Apr 5;188(3):455-75. doi: 10.1016/0022-2836(86)90168-3. J Mol Biol. 1986. PMID: 3016285

7

Three-dimensional structure of proteins determined by molecular dynamics with interproton distance restraints: application to crambin.

Brünger AT, Clore GM, Gronenborn AM, Karplus M. Brünger AT, et al. Among authors: karplus m. Proc Natl Acad Sci U S A. 1986 Jun;83(11):3801-5. doi: 10.1073/pnas.83.11.3801. Proc Natl Acad Sci U S A. 1986. PMID: 3459158 Free PMC article.

8

Molecular and stochastic dynamics of proteins.

Nadler W, Brünger AT, Schulten K, Karplus M. Nadler W, et al. Among authors: karplus m. Proc Natl Acad Sci U S A. 1987 Nov;84(22):7933-7. doi: 10.1073/pnas.84.22.7933. Proc Natl Acad Sci U S A. 1987. PMID: 3479772 Free PMC article.

9

X-ray refinement of protein structures by simulated annealing: test of the method on myohemerythrin.

Kuriyan J, Brünger AT, Karplus M, Hendrickson WA. Kuriyan J, et al. Among authors: karplus m. Acta Crystallogr A. 1989 Jun 1;45 ( Pt 6):396-409. doi: 10.1107/s0108767389000437. Acta Crystallogr A. 1989. PMID: 2619971

The recently developed method of structure factor refinement by molecular dynamics with simulated annealing [Brunger, Kuriyan & Karplus (1987). Science, 235, 458-460] is tested on the 118 residue protein myohemerythrin. ...The error in backbone positions for roughly 85 …

The recently developed method of structure factor refinement by molecular dynamics with simulated annealing [Brunger, Kuriyan & Karpl …

10

Solution conformation of a heptadecapeptide comprising the DNA binding helix F of the cyclic AMP receptor protein of Escherichia coli. Combined use of 1H nuclear magnetic resonance and restrained molecular dynamics.

Clore GM, Gronenborn AM, Brünger AT, Karplus M. Clore GM, et al. Among authors: karplus m. J Mol Biol. 1985 Nov 20;186(2):435-55. doi: 10.1016/0022-2836(85)90116-0. J Mol Biol. 1985. PMID: 3910844

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