Volders PJ - Search Results

1

SUsPECT: a pipeline for variant effect prediction based on custom long-read transcriptomes for improved clinical variant annotation.

Salz R, Saraiva-Agostinho N, Vorsteveld E, van der Made CI, Kersten S, Stemerdink M, Allen J, Volders PJ, Hunt SE, Hoischen A, 't Hoen PAC. Salz R, et al. Among authors: volders pj. BMC Genomics. 2023 Jun 6;24(1):305. doi: 10.1186/s12864-023-09391-5. BMC Genomics. 2023. PMID: 37280537 Free PMC article.

2

Personalized Proteome: Comparing Proteogenomics and Open Variant Search Approaches for Single Amino Acid Variant Detection.

Salz R, Bouwmeester R, Gabriels R, Degroeve S, Martens L, Volders PJ, 't Hoen PAC. Salz R, et al. Among authors: volders pj. J Proteome Res. 2021 Jun 4;20(6):3353-3364. doi: 10.1021/acs.jproteome.1c00264. Epub 2021 May 17. J Proteome Res. 2021. PMID: 33998808 Free PMC article.

3

LNCipedia: a database for annotated human lncRNA transcript sequences and structures.

Volders PJ, Helsens K, Wang X, Menten B, Martens L, Gevaert K, Vandesompele J, Mestdagh P. Volders PJ, et al. Nucleic Acids Res. 2013 Jan;41(Database issue):D246-51. doi: 10.1093/nar/gks915. Epub 2012 Oct 5. Nucleic Acids Res. 2013. PMID: 23042674 Free PMC article.

4

Zipper plot: visualizing transcriptional activity of genomic regions.

Avila Cobos F, Anckaert J, Volders PJ, Everaert C, Rombaut D, Vandesompele J, De Preter K, Mestdagh P. Avila Cobos F, et al. Among authors: volders pj. BMC Bioinformatics. 2017 May 2;18(1):231. doi: 10.1186/s12859-017-1651-7. BMC Bioinformatics. 2017. PMID: 28464823 Free PMC article.

5

Noncoding after All: Biases in Proteomics Data Do Not Explain Observed Absence of lncRNA Translation Products.

Verheggen K, Volders PJ, Mestdagh P, Menschaert G, Van Damme P, Gevaert K, Martens L, Vandesompele J. Verheggen K, et al. Among authors: volders pj. J Proteome Res. 2017 Jul 7;16(7):2508-2515. doi: 10.1021/acs.jproteome.7b00085. Epub 2017 Jun 5. J Proteome Res. 2017. PMID: 28534634

6

SPECS: a non-parametric method to identify tissue-specific molecular features for unbalanced sample groups.

Everaert C, Volders PJ, Morlion A, Thas O, Mestdagh P. Everaert C, et al. Among authors: volders pj. BMC Bioinformatics. 2020 Feb 17;21(1):58. doi: 10.1186/s12859-020-3407-z. BMC Bioinformatics. 2020. PMID: 32066370 Free PMC article.

7

Performance Evaluation of Three DNA Sample Tracking Tools in a Whole Exome Sequencing Workflow.

Wils G, Helsmoortel C, Volders PJ, Vereecke I, Milazzo M, Vandesompele J, Coppieters F, De Leeneer K, Lefever S. Wils G, et al. Among authors: volders pj. Mol Diagn Ther. 2022 Jul;26(4):411-419. doi: 10.1007/s40291-022-00585-3. Epub 2022 May 28. Mol Diagn Ther. 2022. PMID: 35633488

8

Identification of long non-coding RNAs involved in neuronal development and intellectual disability.

D'haene E, Jacobs EZ, Volders PJ, De Meyer T, Menten B, Vergult S. D'haene E, et al. Among authors: volders pj. Sci Rep. 2016 Jun 20;6:28396. doi: 10.1038/srep28396. Sci Rep. 2016. PMID: 27319317 Free PMC article.

9

Long non-coding RNAs in cutaneous melanoma: clinical perspectives.

Hulstaert E, Brochez L, Volders PJ, Vandesompele J, Mestdagh P. Hulstaert E, et al. Among authors: volders pj. Oncotarget. 2017 Jun 27;8(26):43470-43480. doi: 10.18632/oncotarget.16478. Oncotarget. 2017. PMID: 28415644 Free PMC article. Review.

10

LNCipedia 5: towards a reference set of human long non-coding RNAs.

Volders PJ, Anckaert J, Verheggen K, Nuytens J, Martens L, Mestdagh P, Vandesompele J. Volders PJ, et al. Nucleic Acids Res. 2019 Jan 8;47(D1):D135-D139. doi: 10.1093/nar/gky1031. Nucleic Acids Res. 2019. PMID: 30371849 Free PMC article.

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