Karaoz U - Search Results

1

Virus diversity and activity is driven by snowmelt and host dynamics in a high-altitude watershed soil ecosystem.

Coclet C, Sorensen PO, Karaoz U, Wang S, Brodie EL, Eloe-Fadrosh EA, Roux S. Coclet C, et al. Among authors: karaoz u. Microbiome. 2023 Oct 27;11(1):237. doi: 10.1186/s40168-023-01666-z. Microbiome. 2023. PMID: 37891627 Free PMC article.

2

The landscape of histone modifications across 1% of the human genome in five human cell lines.

Koch CM, Andrews RM, Flicek P, Dillon SC, Karaöz U, Clelland GK, Wilcox S, Beare DM, Fowler JC, Couttet P, James KD, Lefebvre GC, Bruce AW, Dovey OM, Ellis PD, Dhami P, Langford CF, Weng Z, Birney E, Carter NP, Vetrie D, Dunham I. Koch CM, et al. Among authors: karaoz u. Genome Res. 2007 Jun;17(6):691-707. doi: 10.1101/gr.5704207. Genome Res. 2007. PMID: 17567990 Free PMC article.

3

Airway microbiota and pathogen abundance in age-stratified cystic fibrosis patients.

Cox MJ, Allgaier M, Taylor B, Baek MS, Huang YJ, Daly RA, Karaoz U, Andersen GL, Brown R, Fujimura KE, Wu B, Tran D, Koff J, Kleinhenz ME, Nielson D, Brodie EL, Lynch SV. Cox MJ, et al. Among authors: karaoz u. PLoS One. 2010 Jun 23;5(6):e11044. doi: 10.1371/journal.pone.0011044. PLoS One. 2010. PMID: 20585638 Free PMC article.

4

Simrank: Rapid and sensitive general-purpose k-mer search tool.

DeSantis TZ, Keller K, Karaoz U, Alekseyenko AV, Singh NN, Brodie EL, Pei Z, Andersen GL, Larsen N. DeSantis TZ, et al. Among authors: karaoz u. BMC Ecol. 2011 Apr 27;11:11. doi: 10.1186/1472-6785-11-11. BMC Ecol. 2011. PMID: 21524302 Free PMC article.

5

Differential growth responses of soil bacterial taxa to carbon substrates of varying chemical recalcitrance.

Goldfarb KC, Karaoz U, Hanson CA, Santee CA, Bradford MA, Treseder KK, Wallenstein MD, Brodie EL. Goldfarb KC, et al. Among authors: karaoz u. Front Microbiol. 2011 May 2;2:94. doi: 10.3389/fmicb.2011.00094. eCollection 2011. Front Microbiol. 2011. PMID: 21833332 Free PMC article.

6

Genomic and physiological characterization of the chromate-reducing, aquifer-derived Firmicute Pelosinus sp. strain HCF1.

Beller HR, Han R, Karaoz U, Lim H, Brodie EL. Beller HR, et al. Among authors: karaoz u. Appl Environ Microbiol. 2013 Jan;79(1):63-73. doi: 10.1128/AEM.02496-12. Epub 2012 Oct 12. Appl Environ Microbiol. 2013. PMID: 23064329 Free PMC article.

7

Compartmentalized microbial composition, oxygen gradients and nitrogen fixation in the gut of Odontotaenius disjunctus.

Ceja-Navarro JA, Nguyen NH, Karaoz U, Gross SR, Herman DJ, Andersen GL, Bruns TD, Pett-Ridge J, Blackwell M, Brodie EL. Ceja-Navarro JA, et al. Among authors: karaoz u. ISME J. 2014 Jan;8(1):6-18. doi: 10.1038/ismej.2013.134. Epub 2013 Aug 29. ISME J. 2014. PMID: 23985746 Free PMC article.

8

Coupled high-throughput functional screening and next generation sequencing for identification of plant polymer decomposing enzymes in metagenomic libraries.

Nyyssönen M, Tran HM, Karaoz U, Weihe C, Hadi MZ, Martiny JB, Martiny AC, Brodie EL. Nyyssönen M, et al. Among authors: karaoz u. Front Microbiol. 2013 Sep 23;4:282. doi: 10.3389/fmicb.2013.00282. eCollection 2013. Front Microbiol. 2013. PMID: 24069019 Free PMC article.

9

Human papillomavirus community in healthy persons, defined by metagenomics analysis of human microbiome project shotgun sequencing data sets.

Ma Y, Madupu R, Karaoz U, Nossa CW, Yang L, Yooseph S, Yachimski PS, Brodie EL, Nelson KE, Pei Z. Ma Y, et al. Among authors: karaoz u. J Virol. 2014 May;88(9):4786-97. doi: 10.1128/JVI.00093-14. Epub 2014 Feb 12. J Virol. 2014. PMID: 24522917 Free PMC article.

10

Divergent aquifer biogeochemical systems converge on similar and unexpected Cr(VI) reduction products.

Beller HR, Yang L, Varadharajan C, Han R, Lim HC, Karaoz U, Molins S, Marcus MA, Brodie EL, Steefel CI, Nico PS. Beller HR, et al. Among authors: karaoz u. Environ Sci Technol. 2014 Sep 16;48(18):10699-706. doi: 10.1021/es5016982. Epub 2014 Aug 13. Environ Sci Technol. 2014. PMID: 25084058

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