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Distinct sets of molecular characteristics define tumor-rejecting neoantigens.
bioRxiv [Preprint]. 2024 Feb 16:2024.02.13.579546. doi: 10.1101/2024.02.13.579546.
bioRxiv. 2024.
PMID: 38405868
Free PMC article.
Preprint.
Accurate modeling of peptide-MHC structures with AlphaFold.
Mikhaylov V, Brambley CA, Keller GLJ, Arbuiso AG, Weiss LI, Baker BM, Levine AJ.
Mikhaylov V, et al. Among authors: brambley ca.
Structure. 2024 Feb 1;32(2):228-241.e4. doi: 10.1016/j.str.2023.11.011. Epub 2023 Dec 18.
Structure. 2024.
PMID: 38113889
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Structural and physical features that distinguish tumor-controlling from inactive cancer neoepitopes.
Custodio JM, Ayres CM, Rosales TJ, Brambley CA, Arbuiso AG, Landau LM, Keller GLJ, Srivastava PK, Baker BM.
Custodio JM, et al. Among authors: brambley ca.
Proc Natl Acad Sci U S A. 2023 Dec 19;120(51):e2312057120. doi: 10.1073/pnas.2312057120. Epub 2023 Dec 12.
Proc Natl Acad Sci U S A. 2023.
PMID: 38085776
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A monomeric mycobacteriophage immunity repressor utilizes two domains to recognize an asymmetric DNA sequence.
McGinnis RJ, Brambley CA, Stamey B, Green WC, Gragg KN, Cafferty ER, Terwilliger TC, Hammel M, Hollis TJ, Miller JM, Gainey MD, Wallen JR.
McGinnis RJ, et al. Among authors: brambley ca.
Nat Commun. 2022 Jul 14;13(1):4105. doi: 10.1038/s41467-022-31678-6.
Nat Commun. 2022.
PMID: 35835745
Free PMC article.
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Sphingomonas sp. KT-1 PahZ2 Structure Reveals a Role for Conformational Dynamics in Peptide Bond Hydrolysis.
Brambley CA, Yared TJ, Gonzalez M, Jansch AL, Wallen JR, Weiland MH, Miller JM.
Brambley CA, et al.
J Phys Chem B. 2021 Jun 10;125(22):5722-5739. doi: 10.1021/acs.jpcb.1c01216. Epub 2021 Jun 1.
J Phys Chem B. 2021.
PMID: 34060838
Free PMC article.
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Examination of the Role of Mg2+ in the Mechanism of Nucleotide Binding to the Monomeric YME1L AAA+ Domain.
Miller JM, Brambley CA, Marsee JD.
Miller JM, et al. Among authors: brambley ca.
Biochemistry. 2020 Nov 17;59(45):4303-4320. doi: 10.1021/acs.biochem.0c00699. Epub 2020 Nov 6.
Biochemistry. 2020.
PMID: 33155794
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Characterization of Mitochondrial YME1L Protease Oxidative Stress-Induced Conformational State.
Brambley CA, Marsee JD, Halper N, Miller JM.
Brambley CA, et al.
J Mol Biol. 2019 Mar 15;431(6):1250-1266. doi: 10.1016/j.jmb.2019.01.039. Epub 2019 Feb 5.
J Mol Biol. 2019.
PMID: 30731091
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