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Using a comprehensive atlas and predictive models to reveal the complexity and evolution of brain-active regulatory elements.
Sci Adv. 2024 May 24;10(21):eadj4452. doi: 10.1126/sciadv.adj4452. Epub 2024 May 23.
Sci Adv. 2024.
PMID: 38781344
Free PMC article.
Rewriting regulatory DNA to dissect and reprogram gene expression.
Martyn GE, Montgomery MT, Jones H, Guo K, Doughty BR, Linder J, Chen Z, Cochran K, Lawrence KA, Munson G, Pampari A, Fulco CP, Kelley DR, Lander ES, Kundaje A, Engreitz JM.
Martyn GE, et al. Among authors: pampari a.
bioRxiv [Preprint]. 2023 Dec 21:2023.12.20.572268. doi: 10.1101/2023.12.20.572268.
bioRxiv. 2023.
PMID: 38187584
Free PMC article.
Preprint.
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Transcription factor stoichiometry, motif affinity and syntax regulate single-cell chromatin dynamics during fibroblast reprogramming to pluripotency.
Nair S, Ameen M, Sundaram L, Pampari A, Schreiber J, Balsubramani A, Wang YX, Burns D, Blau HM, Karakikes I, Wang KC, Kundaje A.
Nair S, et al. Among authors: pampari a.
bioRxiv [Preprint]. 2023 Oct 21:2023.10.04.560808. doi: 10.1101/2023.10.04.560808.
bioRxiv. 2023.
PMID: 37873116
Free PMC article.
Preprint.
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Chromatin accessibility in the Drosophila embryo is determined by transcription factor pioneering and enhancer activation.
Brennan KJ, Weilert M, Krueger S, Pampari A, Liu HY, Yang AWH, Morrison JA, Hughes TR, Rushlow CA, Kundaje A, Zeitlinger J.
Brennan KJ, et al. Among authors: pampari a.
Dev Cell. 2023 Oct 9;58(19):1898-1916.e9. doi: 10.1016/j.devcel.2023.07.007. Epub 2023 Aug 8.
Dev Cell. 2023.
PMID: 37557175
Free PMC article.
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Single-cell multiome of the human retina and deep learning nominate causal variants in complex eye diseases.
Wang SK, Nair S, Li R, Kraft K, Pampari A, Patel A, Kang JB, Luong C, Kundaje A, Chang HY.
Wang SK, et al. Among authors: pampari a.
Cell Genom. 2022 Aug 10;2(8):100164. doi: 10.1016/j.xgen.2022.100164. Epub 2022 Jul 27.
Cell Genom. 2022.
PMID: 36277849
Free PMC article.
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The dynseq browser track shows context-specific features at nucleotide resolution.
Nair S, Barrett A, Li D, Raney BJ, Lee BT, Kerpedjiev P, Ramalingam V, Pampari A, Lekschas F, Wang T, Haeussler M, Kundaje A.
Nair S, et al. Among authors: pampari a.
Nat Genet. 2022 Nov;54(11):1581-1583. doi: 10.1038/s41588-022-01194-w.
Nat Genet. 2022.
PMID: 36241719
Free PMC article.
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Patient Experience Surveys Reveal Gender-Biased Descriptions of Their Care Providers.
Haynes D, Pampari A, Topham C, Schwarzenberger K, Heath M, Zou J, Greiling TM.
Haynes D, et al. Among authors: pampari a.
J Med Syst. 2021 Sep 1;45(10):90. doi: 10.1007/s10916-021-01766-z.
J Med Syst. 2021.
PMID: 34468879
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