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Conserved chromatin and repetitive patterns reveal slow genome evolution in frogs.
Bredeson JV, Mudd AB, Medina-Ruiz S, Mitros T, Smith OK, Miller KE, Lyons JB, Batra SS, Park J, Berkoff KC, Plott C, Grimwood J, Schmutz J, Aguirre-Figueroa G, Khokha MK, Lane M, Philipp I, Laslo M, Hanken J, Kerdivel G, Buisine N, Sachs LM, Buchholz DR, Kwon T, Smith-Parker H, Gridi-Papp M, Ryan MJ, Denton RD, Malone JH, Wallingford JB, Straight AF, Heald R, Hockemeyer D, Harland RM, Rokhsar DS. Bredeson JV, et al. Among authors: berkoff kc. Nat Commun. 2024 Jan 17;15(1):579. doi: 10.1038/s41467-023-43012-9. Nat Commun. 2024. PMID: 38233380 Free PMC article.
Deeply conserved synteny and the evolution of metazoan chromosomes.
Simakov O, Bredeson J, Berkoff K, Marletaz F, Mitros T, Schultz DT, O'Connell BL, Dear P, Martinez DE, Steele RE, Green RE, David CN, Rokhsar DS. Simakov O, et al. Sci Adv. 2022 Feb 4;8(5):eabi5884. doi: 10.1126/sciadv.abi5884. Epub 2022 Feb 2. Sci Adv. 2022. PMID: 35108053 Free PMC article.
CRISPR-Cas9-mediated knockout of CYP79D1 and CYP79D2 in cassava attenuates toxic cyanogen production.
Gomez MA, Berkoff KC, Gill BK, Iavarone AT, Lieberman SE, Ma JM, Schultink A, Karavolias NG, Wyman SK, Chauhan RD, Taylor NJ, Staskawicz BJ, Cho MJ, Rokhsar DS, Lyons JB. Gomez MA, et al. Among authors: berkoff kc. Front Plant Sci. 2023 Mar 17;13:1079254. doi: 10.3389/fpls.2022.1079254. eCollection 2022. Front Plant Sci. 2023. PMID: 37007603 Free PMC article.