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An Intelligent Search & Retrieval System (IRIS) and Clinical and Research Repository for Decision Support Based on Machine Learning and Joint Kernel-based Supervised Hashing.
Foran DJ, Chen W, Kurc T, Gupta R, Kaczmarzyk JR, Torre-Healy LA, Bremer E, Ajjarapu S, Do N, Harris G, Stroup A, Durbin E, Saltz JH. Foran DJ, et al. Among authors: kaczmarzyk jr. Cancer Inform. 2024 Feb 4;23:11769351231223806. doi: 10.1177/11769351231223806. eCollection 2024. Cancer Inform. 2024. PMID: 38322427 Free PMC article.
Open and reusable deep learning for pathology with WSInfer and QuPath.
Kaczmarzyk JR, O'Callaghan A, Inglis F, Gat S, Kurc T, Gupta R, Bremer E, Bankhead P, Saltz JH. Kaczmarzyk JR, et al. NPJ Precis Oncol. 2024 Jan 10;8(1):9. doi: 10.1038/s41698-024-00499-9. NPJ Precis Oncol. 2024. PMID: 38200147 Free PMC article.
Neurodesk: an accessible, flexible and portable data analysis environment for reproducible neuroimaging.
Renton AI, Dao TT, Johnstone T, Civier O, Sullivan RP, White DJ, Lyons P, Slade BM, Abbott DF, Amos TJ, Bollmann S, Botting A, Campbell MEJ, Chang J, Close TG, Dörig M, Eckstein K, Egan GF, Evas S, Flandin G, Garner KG, Garrido MI, Ghosh SS, Grignard M, Halchenko YO, Hannan AJ, Heinsfeld AS, Huber L, Hughes ME, Kaczmarzyk JR, Kasper L, Kuhlmann L, Lou K, Mantilla-Ramos YJ, Mattingley JB, Meier ML, Morris J, Narayanan A, Pestilli F, Puce A, Ribeiro FL, Rogasch NC, Rorden C, Schira MM, Shaw TB, Sowman PF, Spitz G, Stewart AW, Ye X, Zhu JD, Narayanan A, Bollmann S. Renton AI, et al. Among authors: kaczmarzyk jr. Nat Methods. 2024 May;21(5):804-808. doi: 10.1038/s41592-023-02145-x. Epub 2024 Jan 8. Nat Methods. 2024. PMID: 38191935
Neurodesk: An accessible, flexible, and portable data analysis environment for reproducible neuroimaging.
Renton AI, Dao TT, Johnstone T, Civier O, Sullivan RP, White DJ, Lyons P, Slade BM, Abbott DF, Amos TJ, Bollmann S, Botting A, Campbell MEJ, Chang J, Close TG, Eckstein K, Egan GF, Evas S, Flandin G, Garner KG, Garrido MI, Ghosh SS, Grignard M, Hannan AJ, Huber R, Kaczmarzyk JR, Kasper L, Kuhlmann L, Lou K, Mantilla-Ramos YJ, Mattingley JB, Morris J, Narayanan A, Pestilli F, Puce A, Ribeiro FL, Rogasch NC, Rorden C, Schira M, Shaw TB, Sowman PF, Spitz G, Stewart A, Ye X, Zhu JD, Hughes ME, Narayanan A, Bollmann S. Renton AI, et al. Among authors: kaczmarzyk jr. Res Sq [Preprint]. 2023 Mar 13:rs.3.rs-2649734. doi: 10.21203/rs.3.rs-2649734/v1. Res Sq. 2023. PMID: 36993557 Free PMC article. Updated. Preprint.
Resting cerebral oxygen metabolism exhibits archetypal network features.
Hubbard NA, Turner MP, Sitek KR, West KL, Kaczmarzyk JR, Himes L, Thomas BP, Lu H, Rypma B. Hubbard NA, et al. Among authors: kaczmarzyk jr. Hum Brain Mapp. 2021 May;42(7):1952-1968. doi: 10.1002/hbm.25352. Epub 2021 Feb 5. Hum Brain Mapp. 2021. PMID: 33544446 Free PMC article.
Knowing What You Know in Brain Segmentation Using Bayesian Deep Neural Networks.
McClure P, Rho N, Lee JA, Kaczmarzyk JR, Zheng CY, Ghosh SS, Nielson DM, Thomas AG, Bandettini P, Pereira F. McClure P, et al. Among authors: kaczmarzyk jr. Front Neuroinform. 2019 Oct 17;13:67. doi: 10.3389/fninf.2019.00067. eCollection 2019. Front Neuroinform. 2019. PMID: 31749693 Free PMC article.
15 results