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Assessment of Two Restraint Potentials for Coarse-Grained Chemical-Cross-Link-Assisted Modeling of Protein Structures.
J Chem Inf Model. 2024 Feb 26;64(4):1377-1393. doi: 10.1021/acs.jcim.3c01890. Epub 2024 Feb 12.
J Chem Inf Model. 2024.
PMID: 38345917
Free PMC article.
Tautomeric equilibrium and spectroscopic properties of 8-azaguanine revealed by quantum chemistry methods.
Maciejczyk M, Pyrka M.
Maciejczyk M, et al. Among authors: pyrka m.
Eur Biophys J. 2023 Oct;52(6-7):545-557. doi: 10.1007/s00249-023-01672-x. Epub 2023 Jul 28.
Eur Biophys J. 2023.
PMID: 37507591
Free PMC article.
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Long-Time Dynamics of Selected Molecular-Motor Components Using a Physics-Based Coarse-Grained Approach.
Liwo A, Pyrka M, Czaplewski C, Peng X, Niemi AJ.
Liwo A, et al. Among authors: pyrka m.
Biomolecules. 2023 Jun 5;13(6):941. doi: 10.3390/biom13060941.
Biomolecules. 2023.
PMID: 37371521
Free PMC article.
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Why Purine Nucleoside Phosphorylase Ribosylates 2,6-Diamino-8-azapurine in Noncanonical Positions? A Molecular Modeling Study.
Pyrka M, Maciejczyk M.
Pyrka M, et al.
J Chem Inf Model. 2020 Mar 23;60(3):1595-1606. doi: 10.1021/acs.jcim.9b00985. Epub 2020 Jan 30.
J Chem Inf Model. 2020.
PMID: 31944095
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Metal Exchange in the Interprotein ZnII -Binding Site of the Rad50 Hook Domain: Structural Insights into CdII -Induced DNA-Repair Inhibition.
Padjasek M, Maciejczyk M, Nowakowski M, Kerber O, Pyrka M, Koźmiński W, Krężel A.
Padjasek M, et al. Among authors: pyrka m.
Chemistry. 2020 Mar 12;26(15):3297-3313. doi: 10.1002/chem.201904942. Epub 2020 Jan 30.
Chemistry. 2020.
PMID: 31846102
Free PMC article.
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Spectroscopic Properties and Conformational Analysis of Methyl Ester of Sinapic Acid in Various Environments.
Smyk B, Mędza G, Kasparek A, Pyrka M, Gryczynski I, Maciejczyk M.
Smyk B, et al. Among authors: pyrka m.
J Phys Chem B. 2017 Aug 3;121(30):7299-7310. doi: 10.1021/acs.jpcb.7b05508. Epub 2017 Jul 25.
J Phys Chem B. 2017.
PMID: 28692293
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