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Correction: Robustness of cancer microbiome signals over a broad range of methodological variation.
Sepich-Poore GD, McDonald D, Kopylova E, Guccione C, Zhu Q, Austin G, Carpenter C, Fraraccio S, Wandro S, Kosciolek T, Janssen S, Metcalf JL, Song SJ, Kanbar J, Miller-Montgomery S, Heaton R, Mckay R, Patel SP, Swafford AD, Korem T, Knight R. Sepich-Poore GD, et al. Among authors: wandro s. Oncogene. 2024 May;43(20):1579. doi: 10.1038/s41388-024-03018-z. Oncogene. 2024. PMID: 38580705 Free PMC article. No abstract available.
Robustness of cancer microbiome signals over a broad range of methodological variation.
Sepich-Poore GD, McDonald D, Kopylova E, Guccione C, Zhu Q, Austin G, Carpenter C, Fraraccio S, Wandro S, Kosciolek T, Janssen S, Metcalf JL, Song SJ, Kanbar J, Miller-Montgomery S, Heaton R, Mckay R, Patel SP, Swafford AD, Korem T, Knight R. Sepich-Poore GD, et al. Among authors: wandro s. Oncogene. 2024 Apr;43(15):1127-1148. doi: 10.1038/s41388-024-02974-w. Epub 2024 Feb 23. Oncogene. 2024. PMID: 38396294 Free PMC article.
Signatures of HIV and Major Depressive Disorder in the Plasma Microbiome.
Taylor BC, Sheikh Andalibi M, Wandro S, Weldon KC, Sepich-Poore GD, Carpenter CS, Fraraccio S, Franklin D, Iudicello JE, Letendre S, Gianella S, Grant I, Ellis RJ, Heaton RK, Knight R, Swafford AD. Taylor BC, et al. Among authors: wandro s. Microorganisms. 2023 Apr 14;11(4):1022. doi: 10.3390/microorganisms11041022. Microorganisms. 2023. PMID: 37110445 Free PMC article.
Pan-cancer analyses reveal cancer-type-specific fungal ecologies and bacteriome interactions.
Narunsky-Haziza L, Sepich-Poore GD, Livyatan I, Asraf O, Martino C, Nejman D, Gavert N, Stajich JE, Amit G, González A, Wandro S, Perry G, Ariel R, Meltser A, Shaffer JP, Zhu Q, Balint-Lahat N, Barshack I, Dadiani M, Gal-Yam EN, Patel SP, Bashan A, Swafford AD, Pilpel Y, Knight R, Straussman R. Narunsky-Haziza L, et al. Among authors: wandro s. Cell. 2022 Sep 29;185(20):3789-3806.e17. doi: 10.1016/j.cell.2022.09.005. Cell. 2022. PMID: 36179670 Free PMC article.
Zebra: Static and Dynamic Genome Cover Thresholds with Overlapping References.
Hakim D, Wandro S, Zengler K, Zaramela LS, Nowinski B, Swafford A, Zhu Q, Song SJ, Gonzalez A, McDonald D, Knight R. Hakim D, et al. Among authors: wandro s. mSystems. 2022 Oct 26;7(5):e0075822. doi: 10.1128/msystems.00758-22. Epub 2022 Sep 8. mSystems. 2022. PMID: 36073806 Free PMC article.
Phage Cocktails Constrain the Growth of Enterococcus.
Wandro S, Ghatbale P, Attai H, Hendrickson C, Samillano C, Suh J, Dunham SJB, Pride DT, Whiteson K. Wandro S, et al. mSystems. 2022 Aug 30;7(4):e0001922. doi: 10.1128/msystems.00019-22. Epub 2022 Jun 28. mSystems. 2022. PMID: 35762793 Free PMC article.
Multiomic Analyses of Nascent Preterm Infant Microbiomes Differentiation Suggest Opportunities for Targeted Intervention.
Orchanian SB, Gauglitz JM, Wandro S, Weldon KC, Doty M, Stillwell K, Hansen S, Jiang L, Vargas F, Rhee KE, Lumeng JC, Dorrestein PC, Knight R, Kim JH, Song SJ, Swafford AD. Orchanian SB, et al. Among authors: wandro s. Adv Biol (Weinh). 2022 Aug;6(8):e2101313. doi: 10.1002/adbi.202101313. Epub 2022 Jun 1. Adv Biol (Weinh). 2022. PMID: 35652166 Free PMC article.
Swapping Metagenomics Preprocessing Pipeline Components Offers Speed and Sensitivity Increases.
Armstrong G, Martino C, Morris J, Khaleghi B, Kang J, DeReus J, Zhu Q, Roush D, McDonald D, Gonazlez A, Shaffer JP, Carpenter C, Estaki M, Wandro S, Eilert S, Akel A, Eno J, Curewitz K, Swafford AD, Moshiri N, Rosing T, Knight R. Armstrong G, et al. Among authors: wandro s. mSystems. 2022 Apr 26;7(2):e0137821. doi: 10.1128/msystems.01378-21. Epub 2022 Mar 16. mSystems. 2022. PMID: 35293792 Free PMC article.
Class Ib MHC-Mediated Immune Interactions Play a Critical Role in Maintaining Mucosal Homeostasis in the Mammalian Large Intestine.
Dasgupta S, Maricic I, Tang J, Wandro S, Weldon K, Carpenter CS, Eckmann L, Rivera-Nieves J, Sandborn W, Knight R, Dorrestein P, Swafford AD, Kumar V. Dasgupta S, et al. Among authors: wandro s. Immunohorizons. 2021 Dec 15;5(12):953-971. doi: 10.4049/immunohorizons.2100090. Immunohorizons. 2021. PMID: 34911745 Free PMC article.
21 results