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The impact of package selection and versioning on single-cell RNA-seq analysis.
Rich JM, Moses L, Einarsson PH, Jackson K, Luebbert L, Booeshaghi AS, Antonsson S, Sullivan DK, Bray N, Melsted P, Pachter L. Rich JM, et al. Among authors: pachter l. bioRxiv [Preprint]. 2024 Apr 11:2024.04.04.588111. doi: 10.1101/2024.04.04.588111. bioRxiv. 2024. PMID: 38617255 Free PMC article. Preprint.
Near-optimal probabilistic RNA-seq quantification.
Bray NL, Pimentel H, Melsted P, Pachter L. Bray NL, et al. Among authors: pachter l. Nat Biotechnol. 2016 May;34(5):525-7. doi: 10.1038/nbt.3519. Epub 2016 Apr 4. Nat Biotechnol. 2016. PMID: 27043002
Modular, efficient and constant-memory single-cell RNA-seq preprocessing.
Melsted P, Booeshaghi AS, Liu L, Gao F, Lu L, Min KHJ, da Veiga Beltrame E, Hjörleifsson KE, Gehring J, Pachter L. Melsted P, et al. Among authors: pachter l. Nat Biotechnol. 2021 Jul;39(7):813-818. doi: 10.1038/s41587-021-00870-2. Epub 2021 Apr 1. Nat Biotechnol. 2021. PMID: 33795888
244 results