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A map of the rubisco biochemical landscape.
Prywes N, Philips NR, Oltrogge LM, Lindner S, Candace Tsai YC, de Pins B, Cowan AE, Taylor-Kearney LJ, Chang HA, Hall LN, Bellieny-Rabelo D, Nisonoff HM, Weissman RF, Flamholz AI, Ding D, Bhatt AY, Shih PM, Mueller-Cajar O, Milo R, Savage DF. Prywes N, et al. Among authors: flamholz ai. bioRxiv [Preprint]. 2024 Apr 11:2023.09.27.559826. doi: 10.1101/2023.09.27.559826. bioRxiv. 2024. PMID: 38645011 Free PMC article. Preprint.
Revisiting Trade-offs between Rubisco Kinetic Parameters.
Flamholz AI, Prywes N, Moran U, Davidi D, Bar-On YM, Oltrogge LM, Alves R, Savage D, Milo R. Flamholz AI, et al. Biochemistry. 2019 Aug 6;58(31):3365-3376. doi: 10.1021/acs.biochem.9b00237. Epub 2019 Jul 22. Biochemistry. 2019. PMID: 31259528 Free PMC article.
Learning to Build a β-Carboxysome.
Blikstad C, Flamholz AI, Oltrogge LM, Savage DF. Blikstad C, et al. Among authors: flamholz ai. Biochemistry. 2019 Apr 23;58(16):2091-2092. doi: 10.1021/acs.biochem.9b00199. Epub 2019 Apr 10. Biochemistry. 2019. PMID: 30968695 Free PMC article.
Trajectories for the evolution of bacterial CO2-concentrating mechanisms.
Flamholz AI, Dugan E, Panich J, Desmarais JJ, Oltrogge LM, Fischer WW, Singer SW, Savage DF. Flamholz AI, et al. Proc Natl Acad Sci U S A. 2022 Dec 6;119(49):e2210539119. doi: 10.1073/pnas.2210539119. Epub 2022 Dec 1. Proc Natl Acad Sci U S A. 2022. PMID: 36454757 Free PMC article.
Carbon isotope fractionation by an ancestral rubisco suggests that biological proxies for CO2 through geologic time should be reevaluated.
Wang RZ, Nichols RJ, Liu AK, Flamholz AI, Artier J, Banda DM, Savage DF, Eiler JM, Shih PM, Fischer WW. Wang RZ, et al. Among authors: flamholz ai. Proc Natl Acad Sci U S A. 2023 May 16;120(20):e2300466120. doi: 10.1073/pnas.2300466120. Epub 2023 May 8. Proc Natl Acad Sci U S A. 2023. PMID: 37155899 Free PMC article.
Highly active rubiscos discovered by systematic interrogation of natural sequence diversity.
Davidi D, Shamshoum M, Guo Z, Bar-On YM, Prywes N, Oz A, Jablonska J, Flamholz A, Wernick DG, Antonovsky N, de Pins B, Shachar L, Hochhauser D, Peleg Y, Albeck S, Sharon I, Mueller-Cajar O, Milo R. Davidi D, et al. EMBO J. 2020 Sep 15;39(18):e104081. doi: 10.15252/embj.2019104081. Epub 2020 Jun 5. EMBO J. 2020. PMID: 32500941 Free PMC article.
The quantified cell.
Flamholz A, Phillips R, Milo R. Flamholz A, et al. Mol Biol Cell. 2014 Nov 5;25(22):3497-500. doi: 10.1091/mbc.E14-09-1347. Mol Biol Cell. 2014. PMID: 25368429 Free PMC article.
43 results