Machiraju R - Search Results

1

AZGP1 deficiency promotes angiogenesis in prostate cancer.

Wen RM, Qiu Z, Marti GEW, Peterson EE, Marques FJG, Bermudez A, Wei Y, Nolley R, Lam N, Polasko AL, Chiu CL, Zhang D, Cho S, Karageorgos GM, McDonough E, Chadwick C, Ginty F, Jung KJ, Machiraju R, Mallick P, Crowley L, Pollack JR, Zhao H, Pitteri SJ, Brooks JD. Wen RM, et al. Among authors: machiraju r. J Transl Med. 2024 Apr 24;22(1):383. doi: 10.1186/s12967-024-05183-x. J Transl Med. 2024. PMID: 38659028 Free PMC article.

2

Deep learning-based automated pipeline for blood vessel detection and distribution analysis in multiplexed prostate cancer images.

Karageorgos GM, Cho S, McDonough E, Chadwick C, Ghose S, Owens J, Jung KJ, Machiraju R, West R, Brooks JD, Mallick P, Ginty F. Karageorgos GM, et al. Among authors: machiraju r. Front Bioinform. 2024 Jan 23;3:1296667. doi: 10.3389/fbinf.2023.1296667. eCollection 2023. Front Bioinform. 2024. PMID: 38323039 Free PMC article.

3

IntLIM 2.0: identifying multi-omic relationships dependent on discrete or continuous phenotypic measurements.

Eicher T, Spencer KD, Siddiqui JK, Machiraju R, Mathé EA. Eicher T, et al. Among authors: machiraju r. Bioinform Adv. 2023 Feb 1;3(1):vbad009. doi: 10.1093/bioadv/vbad009. eCollection 2023. Bioinform Adv. 2023. PMID: 36922980 Free PMC article.

4

Improving Compound Activity Classification via Deep Transfer and Representation Learning.

Dey V, Machiraju R, Ning X. Dey V, et al. Among authors: machiraju r. ACS Omega. 2022 Mar 11;7(11):9465-9483. doi: 10.1021/acsomega.1c06805. eCollection 2022 Mar 22. ACS Omega. 2022. PMID: 35350358 Free PMC article.

5

Chronic Kidney Disease of Unknown Etiology in India: What Do We Know and Where We Need to Go.

John O, Gummudi B, Jha A, Gopalakrishnan N, Kalra OP, Kaur P, Kher V, Kumar V, Machiraju RS, Osborne N, Palo SK, Parameswaran S, Pati S, Prasad N, Rathore V, Rajapurkar MM, Sahay M, Tatapudi RR, Thakur JS, Venugopal V, Jha V. John O, et al. Among authors: machiraju rs. Kidney Int Rep. 2021 Aug 9;6(11):2743-2751. doi: 10.1016/j.ekir.2021.07.031. eCollection 2021 Nov. Kidney Int Rep. 2021. PMID: 34805627 Free PMC article.

6

Autonomous Computing Materials.

Bathe M, Hernandez R, Komiyama T, Machiraju R, Neogi S. Bathe M, et al. Among authors: machiraju r. ACS Nano. 2021 Mar 23;15(3):3586-3592. doi: 10.1021/acsnano.0c09556. Epub 2021 Feb 26. ACS Nano. 2021. PMID: 33636971 Free article.

7

Self-organizing maps with variable neighborhoods facilitate learning of chromatin accessibility signal shapes associated with regulatory elements.

Eicher T, Chan J, Luu H, Machiraju R, Mathé EA. Eicher T, et al. Among authors: machiraju r. BMC Bioinformatics. 2021 Jan 30;22(1):35. doi: 10.1186/s12859-021-03976-1. BMC Bioinformatics. 2021. PMID: 33516170 Free PMC article.

8

Spatial cell type composition in normal and Alzheimers human brains is revealed using integrated mouse and human single cell RNA sequencing.

Johnson TS, Xiang S, Helm BR, Abrams ZB, Neidecker P, Machiraju R, Zhang Y, Huang K, Zhang J. Johnson TS, et al. Among authors: machiraju r. Sci Rep. 2020 Oct 22;10(1):18014. doi: 10.1038/s41598-020-74917-w. Sci Rep. 2020. PMID: 33093481 Free PMC article.

9

Metabolomics and Multi-Omics Integration: A Survey of Computational Methods and Resources.

Eicher T, Kinnebrew G, Patt A, Spencer K, Ying K, Ma Q, Machiraju R, Mathé AEA. Eicher T, et al. Among authors: machiraju r. Metabolites. 2020 May 15;10(5):202. doi: 10.3390/metabo10050202. Metabolites. 2020. PMID: 32429287 Free PMC article. Review.

10

Challenges in proteogenomics: a comparison of analysis methods with the case study of the DREAM proteogenomics sub-challenge.

Eicher T, Patt A, Kautto E, Machiraju R, Mathé E, Zhang Y. Eicher T, et al. Among authors: machiraju r. BMC Bioinformatics. 2019 Dec 20;20(Suppl 24):669. doi: 10.1186/s12859-019-3253-z. BMC Bioinformatics. 2019. PMID: 31861998 Free PMC article.

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