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A mutant fitness compendium in Bifidobacteria reveals molecular determinants of colonization and host-microbe interactions.
Shiver AL, Sun J, Culver R, Violette A, Wynter C, Nieckarz M, Mattiello SP, Sekhon PK, Friess L, Carlson HK, Wong D, Higginbottom S, Weglarz M, Wang W, Knapp BD, Guiberson E, Sanchez J, Huang PH, Garcia PA, Buie CR, Good B, DeFelice B, Cava F, Scaria J, Sonnenburg J, Sinderen DV, Deutschbauer AM, Huang KC. Shiver AL, et al. Among authors: huang ph, huang kc. bioRxiv [Preprint]. 2023 Aug 29:2023.08.29.555234. doi: 10.1101/2023.08.29.555234. bioRxiv. 2023. PMID: 37693407 Free PMC article. Preprint.
Quantifying rapid bacterial evolution and transmission within the mouse intestine.
Vasquez KS, Willis L, Cira NJ, Ng KM, Pedro MF, Aranda-Díaz A, Rajendram M, Yu FB, Higginbottom SK, Neff N, Sherlock G, Xavier KB, Quake SR, Sonnenburg JL, Good BH, Huang KC. Vasquez KS, et al. Among authors: huang kc. Cell Host Microbe. 2021 Sep 8;29(9):1454-1468.e4. doi: 10.1016/j.chom.2021.08.003. Epub 2021 Sep 1. Cell Host Microbe. 2021. PMID: 34473943 Free PMC article.
Establishment and characterization of stable, diverse, fecal-derived in vitro microbial communities that model the intestinal microbiota.
Aranda-Díaz A, Ng KM, Thomsen T, Real-Ramírez I, Dahan D, Dittmar S, Gonzalez CG, Chavez T, Vasquez KS, Nguyen TH, Yu FB, Higginbottom SK, Neff NF, Elias JE, Sonnenburg JL, Huang KC. Aranda-Díaz A, et al. Among authors: huang kc. Cell Host Microbe. 2022 Feb 9;30(2):260-272.e5. doi: 10.1016/j.chom.2021.12.008. Epub 2022 Jan 19. Cell Host Microbe. 2022. PMID: 35051349 Free PMC article.
Human metabolome variation along the upper intestinal tract.
Folz J, Culver RN, Morales JM, Grembi J, Triadafilopoulos G, Relman DA, Huang KC, Shalon D, Fiehn O. Folz J, et al. Among authors: huang kc. Nat Metab. 2023 May;5(5):777-788. doi: 10.1038/s42255-023-00777-z. Epub 2023 May 10. Nat Metab. 2023. PMID: 37165176 Free PMC article.
Profiling the human intestinal environment under physiological conditions.
Shalon D, Culver RN, Grembi JA, Folz J, Treit PV, Shi H, Rosenberger FA, Dethlefsen L, Meng X, Yaffe E, Aranda-Díaz A, Geyer PE, Mueller-Reif JB, Spencer S, Patterson AD, Triadafilopoulos G, Holmes SP, Mann M, Fiehn O, Relman DA, Huang KC. Shalon D, et al. Among authors: huang kc. Nature. 2023 May;617(7961):581-591. doi: 10.1038/s41586-023-05989-7. Epub 2023 May 10. Nature. 2023. PMID: 37165188 Free PMC article.
Transient Osmotic Perturbation Causes Long-Term Alteration to the Gut Microbiota.
Tropini C, Moss EL, Merrill BD, Ng KM, Higginbottom SK, Casavant EP, Gonzalez CG, Fremin B, Bouley DM, Elias JE, Bhatt AS, Huang KC, Sonnenburg JL. Tropini C, et al. Among authors: huang kc. Cell. 2018 Jun 14;173(7):1742-1754.e17. doi: 10.1016/j.cell.2018.05.008. Cell. 2018. PMID: 29906449 Free PMC article.
Recovery of the Gut Microbiota after Antibiotics Depends on Host Diet, Community Context, and Environmental Reservoirs.
Ng KM, Aranda-Díaz A, Tropini C, Frankel MR, Van Treuren W, O'Loughlin CT, Merrill BD, Yu FB, Pruss KM, Oliveira RA, Higginbottom SK, Neff NF, Fischbach MA, Xavier KB, Sonnenburg JL, Huang KC. Ng KM, et al. Among authors: huang kc. Cell Host Microbe. 2019 Nov 13;26(5):650-665.e4. doi: 10.1016/j.chom.2019.10.011. Cell Host Microbe. 2019. PMID: 31726029 Free PMC article.
Quantitative Imaging of Gut Microbiota Spatial Organization.
Earle KA, Billings G, Sigal M, Lichtman JS, Hansson GC, Elias JE, Amieva MR, Huang KC, Sonnenburg JL. Earle KA, et al. Among authors: huang kc. Cell Host Microbe. 2015 Oct 14;18(4):478-88. doi: 10.1016/j.chom.2015.09.002. Epub 2015 Oct 1. Cell Host Microbe. 2015. PMID: 26439864 Free PMC article.
1,009 results