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Enhlink infers distal and context-specific enhancer-promoter linkages.
Poirion OB, Zuo W, Spruce C, Daigle SL, Olson A, Skelly DA, Chesler EJ, Baker CL, White BS. Poirion OB, et al. bioRxiv [Preprint]. 2023 May 11:2023.05.11.540453. doi: 10.1101/2023.05.11.540453. bioRxiv. 2023. PMID: 37214950 Free PMC article. Preprint.
Mapping the Effects of Genetic Variation on Chromatin State and Gene Expression Reveals Loci That Control Ground State Pluripotency.
Skelly DA, Czechanski A, Byers C, Aydin S, Spruce C, Olivier C, Choi K, Gatti DM, Raghupathy N, Keele GR, Stanton A, Vincent M, Dion S, Greenstein I, Pankratz M, Porter DK, Martin W, O'Connor C, Qin W, Harrill AH, Choi T, Churchill GA, Munger SC, Baker CL, Reinholdt LG. Skelly DA, et al. Cell Stem Cell. 2020 Sep 3;27(3):459-469.e8. doi: 10.1016/j.stem.2020.07.005. Epub 2020 Aug 13. Cell Stem Cell. 2020. PMID: 32795400 Free PMC article.