U01 HL129958/HL/NHLBI NIH HHS/United States[Grants and Funding] - Search Results

Year	Number of Results
2016	1
2017	2
2018	1
2019	2
2020	3
2021	1
2023	1
2024	0

1

Dekker J, Belmont AS, Guttman M, Leshyk VO, Lis JT, Lomvardas S, Mirny LA, O'Shea CC, Park PJ, Ren B, Politz JCR, Shendure J, Zhong S; 4D Nucleome Network. Dekker J, et al. Nature. 2017 Sep 13;549(7671):219-226. doi: 10.1038/nature23884. Nature. 2017. PMID: 28905911 Free PMC article.

2

Stress-induced transcriptional memory accelerates promoter-proximal pause release and decelerates termination over mitotic divisions.

Vihervaara A, Mahat DB, Himanen SV, Blom MAH, Lis JT, Sistonen L. Vihervaara A, et al. Mol Cell. 2021 Apr 15;81(8):1715-1731.e6. doi: 10.1016/j.molcel.2021.03.007. Epub 2021 Mar 29. Mol Cell. 2021. PMID: 33784494 Free PMC article.

3

Many functionally connected loci foster adaptive diversification along a neotropical hybrid zone.

Lewis JJ, Van Belleghem SM, Papa R, Danko CG, Reed RD. Lewis JJ, et al. Sci Adv. 2020 Sep 25;6(39):eabb8617. doi: 10.1126/sciadv.abb8617. Print 2020 Sep. Sci Adv. 2020. PMID: 32978147 Free PMC article.

4

Chromatin conformation remains stable upon extensive transcriptional changes driven by heat shock.

Ray J, Munn PR, Vihervaara A, Lewis JJ, Ozer A, Danko CG, Lis JT. Ray J, et al. Proc Natl Acad Sci U S A. 2019 Sep 24;116(39):19431-19439. doi: 10.1073/pnas.1901244116. Epub 2019 Sep 10. Proc Natl Acad Sci U S A. 2019. PMID: 31506350 Free PMC article.

5

An improved 4'-aminomethyltrioxsalen-based nucleic acid crosslinker for biotinylation of double-stranded DNA or RNA.

Wielenberg K, Wang M, Yang M, Ozer A, Lis JT, Lin H. Wielenberg K, et al. RSC Adv. 2020 Nov 2;10(65):39870-39874. doi: 10.1039/d0ra07437c. eCollection 2020 Oct 27. RSC Adv. 2020. PMID: 35515418 Free PMC article.

6

Nanoscale photobiotinylation, pulldown and sequencing of region-specific DNA from intact cells.

Roberts TC, Kushner M, Crowley JC, Ozer A, Wang J, Ray J, Lis JT, Zipfel WR. Roberts TC, et al. bioRxiv [Preprint]. 2023 Dec 6:2023.12.04.569951. doi: 10.1101/2023.12.04.569951. bioRxiv. 2023. PMID: 38105945 Free PMC article. Preprint.

7

RTFBSDB: an integrated framework for transcription factor binding site analysis.

Wang Z, Martins AL, Danko CG. Wang Z, et al. Bioinformatics. 2016 Oct 1;32(19):3024-6. doi: 10.1093/bioinformatics/btw338. Epub 2016 Jun 10. Bioinformatics. 2016. PMID: 27288497 Free PMC article.

8

Initiation of mtDNA transcription is followed by pausing, and diverges across human cell types and during evolution.

Blumberg A, Rice EJ, Kundaje A, Danko CG, Mishmar D. Blumberg A, et al. Genome Res. 2017 Mar;27(3):362-373. doi: 10.1101/gr.209924.116. Epub 2017 Jan 3. Genome Res. 2017. PMID: 28049628 Free PMC article.

9

Dynamic evolution of regulatory element ensembles in primate CD4⁺ T cells.

Danko CG, Choate LA, Marks BA, Rice EJ, Wang Z, Chu T, Martins AL, Dukler N, Coonrod SA, Tait Wojno ED, Lis JT, Kraus WL, Siepel A. Danko CG, et al. Nat Ecol Evol. 2018 Mar;2(3):537-548. doi: 10.1038/s41559-017-0447-5. Epub 2018 Jan 29. Nat Ecol Evol. 2018. PMID: 29379187 Free PMC article.

10

De novo missense variants disrupting protein-protein interactions affect risk for autism through gene co-expression and protein networks in neuronal cell types.

Chen S, Wang J, Cicek E, Roeder K, Yu H, Devlin B. Chen S, et al. Mol Autism. 2020 Oct 8;11(1):76. doi: 10.1186/s13229-020-00386-7. Mol Autism. 2020. PMID: 33032641 Free PMC article.

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