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EnvCNN: A Convolutional Neural Network Model for Evaluating Isotopic Envelopes in Top-Down Mass-Spectral Deconvolution.
Anal Chem. 2020 Jun 2;92(11):7778-7785. doi: 10.1021/acs.analchem.0c00903. Epub 2020 May 13.
Anal Chem. 2020.
PMID: 32356965
Free PMC article.
Large-Scale Qualitative and Quantitative Top-Down Proteomics Using Capillary Zone Electrophoresis-Electrospray Ionization-Tandem Mass Spectrometry with Nanograms of Proteome Samples.
Lubeckyj RA, Basharat AR, Shen X, Liu X, Sun L.
Lubeckyj RA, et al. Among authors: basharat ar.
J Am Soc Mass Spectrom. 2019 Aug;30(8):1435-1445. doi: 10.1007/s13361-019-02167-w. Epub 2019 Apr 9.
J Am Soc Mass Spectrom. 2019.
PMID: 30972727
Free PMC article.
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Capillary Zone Electrophoresis-Tandem Mass Spectrometry with Activated Ion Electron Transfer Dissociation for Large-scale Top-down Proteomics.
McCool EN, Lodge JM, Basharat AR, Liu X, Coon JJ, Sun L.
McCool EN, et al. Among authors: basharat ar.
J Am Soc Mass Spectrom. 2019 Dec;30(12):2470-2479. doi: 10.1007/s13361-019-02206-6. Epub 2019 May 9.
J Am Soc Mass Spectrom. 2019.
PMID: 31073891
Free PMC article.
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TopFD: A Proteoform Feature Detection Tool for Top-Down Proteomics.
Basharat AR, Zang Y, Sun L, Liu X.
Basharat AR, et al.
Anal Chem. 2023 May 30;95(21):8189-8196. doi: 10.1021/acs.analchem.2c05244. Epub 2023 May 17.
Anal Chem. 2023.
PMID: 37196155
Free PMC article.
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SPECTRUM - A MATLAB Toolbox for Proteoform Identification from Top-Down Proteomics Data.
Basharat AR, Iman K, Khalid MF, Anwar Z, Hussain R, Kabir HG, Tahreem M, Shahid A, Humayun M, Hayat HA, Mustafa M, Shoaib MA, Ullah Z, Zarina S, Ahmed S, Uddin E, Hamera S, Ahmad F, Chaudhary SU.
Basharat AR, et al.
Sci Rep. 2019 Aug 2;9(1):11267. doi: 10.1038/s41598-019-47724-1.
Sci Rep. 2019.
PMID: 31375721
Free PMC article.
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PERCEPTRON: an open-source GPU-accelerated proteoform identification pipeline for top-down proteomics.
Khalid MF, Iman K, Ghafoor A, Saboor M, Ali A, Muaz U, Basharat AR, Tahir T, Abubakar M, Akhter MA, Nabi W, Vanderbauwhede W, Ahmad F, Wajid B, Chaudhary SU.
Khalid MF, et al. Among authors: basharat ar.
Nucleic Acids Res. 2021 Jul 2;49(W1):W510-W515. doi: 10.1093/nar/gkab368.
Nucleic Acids Res. 2021.
PMID: 33999207
Free PMC article.
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TopDIA: A Software Tool for Top-Down Data-Independent Acquisition Proteomics.
Basharat AR, Xiong X, Xu T, Zang Y, Sun L, Liu X.
Basharat AR, et al.
bioRxiv [Preprint]. 2024 Apr 9:2024.04.05.588302. doi: 10.1101/2024.04.05.588302.
bioRxiv. 2024.
PMID: 38645171
Free PMC article.
Preprint.
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