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Top-down proteomics reveals a unique protein S-thiolation switch in Salmonella Typhimurium in response to infection-like conditions.
Ansong C, Wu S, Meng D, Liu X, Brewer HM, Deatherage Kaiser BL, Nakayasu ES, Cort JR, Pevzner P, Smith RD, Heffron F, Adkins JN, Pasa-Tolic L. Ansong C, et al. Among authors: liu x. Proc Natl Acad Sci U S A. 2013 Jun 18;110(25):10153-8. doi: 10.1073/pnas.1221210110. Epub 2013 May 29. Proc Natl Acad Sci U S A. 2013. PMID: 23720318 Free PMC article.
Spectral probabilities of top-down tandem mass spectra.
Liu X, Segar MW, Li SC, Kim S. Liu X, et al. BMC Genomics. 2014;15 Suppl 1(Suppl 1):S9. doi: 10.1186/1471-2164-15-S1-S9. Epub 2014 Jan 24. BMC Genomics. 2014. PMID: 24564718 Free PMC article.
De Novo Sequencing of Peptides from Top-Down Tandem Mass Spectra.
Vyatkina K, Wu S, Dekker LJ, VanDuijn MM, Liu X, Tolić N, Dvorkin M, Alexandrova S, Luider TM, Paša-Tolić L, Pevzner PA. Vyatkina K, et al. Among authors: liu x. J Proteome Res. 2015 Nov 6;14(11):4450-62. doi: 10.1021/pr501244v. Epub 2015 Oct 13. J Proteome Res. 2015. PMID: 26412692
MASH Suite Pro: A Comprehensive Software Tool for Top-Down Proteomics.
Cai W, Guner H, Gregorich ZR, Chen AJ, Ayaz-Guner S, Peng Y, Valeja SG, Liu X, Ge Y. Cai W, et al. Among authors: liu x. Mol Cell Proteomics. 2016 Feb;15(2):703-14. doi: 10.1074/mcp.O115.054387. Epub 2015 Nov 23. Mol Cell Proteomics. 2016. PMID: 26598644 Free PMC article.
Top-down analysis of protein samples by de novo sequencing techniques.
Vyatkina K, Wu S, Dekker LJ, VanDuijn MM, Liu X, Tolić N, Luider TM, Paša-Tolić L, Pevzner PA. Vyatkina K, et al. Among authors: liu x. Bioinformatics. 2016 Sep 15;32(18):2753-9. doi: 10.1093/bioinformatics/btw307. Epub 2016 May 14. Bioinformatics. 2016. PMID: 27187201 Free PMC article.
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