Riba A - Search Results

1

A rare codon-based translational program of cell proliferation.

Guimaraes JC, Mittal N, Gnann A, Jedlinski D, Riba A, Buczak K, Schmidt A, Zavolan M. Guimaraes JC, et al. Among authors: riba a. Genome Biol. 2020 Feb 27;21(1):44. doi: 10.1186/s13059-020-1943-5. Genome Biol. 2020. PMID: 32102681 Free PMC article.

2

Protein synthesis rates and ribosome occupancies reveal determinants of translation elongation rates.

Riba A, Di Nanni N, Mittal N, Arhné E, Schmidt A, Zavolan M. Riba A, et al. Proc Natl Acad Sci U S A. 2019 Jul 23;116(30):15023-15032. doi: 10.1073/pnas.1817299116. Epub 2019 Jul 10. Proc Natl Acad Sci U S A. 2019. PMID: 31292258 Free PMC article.

3

Terminal exon characterization with TECtool reveals an abundance of cell-specific isoforms.

Gruber AJ, Gypas F, Riba A, Schmidt R, Zavolan M. Gruber AJ, et al. Among authors: riba a. Nat Methods. 2018 Oct;15(10):832-836. doi: 10.1038/s41592-018-0114-z. Epub 2018 Sep 10. Nat Methods. 2018. PMID: 30202060 Free PMC article.

4

Explicit Modeling of siRNA-Dependent On- and Off-Target Repression Improves the Interpretation of Screening Results.

Riba A, Emmenlauer M, Chen A, Sigoillot F, Cong F, Dehio C, Jenkins J, Zavolan M. Riba A, et al. Cell Syst. 2017 Feb 22;4(2):182-193.e4. doi: 10.1016/j.cels.2017.01.011. Epub 2017 Feb 15. Cell Syst. 2017. PMID: 28215525 Free article.

5

Regulation of transcription reactivation dynamics exiting mitosis.

Sarnataro S, Riba A, Molina N. Sarnataro S, et al. Among authors: riba a. PLoS Comput Biol. 2021 Oct 4;17(10):e1009354. doi: 10.1371/journal.pcbi.1009354. eCollection 2021 Oct. PLoS Comput Biol. 2021. PMID: 34606497 Free PMC article.

6

Cell cycle gene regulation dynamics revealed by RNA velocity and deep-learning.

Riba A, Oravecz A, Durik M, Jiménez S, Alunni V, Cerciat M, Jung M, Keime C, Keyes WM, Molina N. Riba A, et al. Nat Commun. 2022 May 23;13(1):2865. doi: 10.1038/s41467-022-30545-8. Nat Commun. 2022. PMID: 35606383 Free PMC article.

7

Temporal specificity and heterogeneity of Drosophila immune cells.

Cattenoz PB, Sakr R, Pavlidaki A, Delaporte C, Riba A, Molina N, Hariharan N, Mukherjee T, Giangrande A. Cattenoz PB, et al. Among authors: riba a. EMBO J. 2020 Jun 17;39(12):e104486. doi: 10.15252/embj.2020104486. Epub 2020 Mar 12. EMBO J. 2020. PMID: 32162708 Free PMC article.

8

Hybridization of powdery mildew strains gives rise to pathogens on novel agricultural crop species.

Menardo F, Praz CR, Wyder S, Ben-David R, Bourras S, Matsumae H, McNally KE, Parlange F, Riba A, Roffler S, Schaefer LK, Shimizu KK, Valenti L, Zbinden H, Wicker T, Keller B. Menardo F, et al. Among authors: riba a. Nat Genet. 2016 Feb;48(2):201-5. doi: 10.1038/ng.3485. Epub 2016 Jan 11. Nat Genet. 2016. PMID: 26752267 Free article.

9

A Model-Driven Quantitative Analysis of Retrotransposon Distributions in the Human Genome.

Riba A, Fumagalli MR, Caselle M, Osella M. Riba A, et al. Genome Biol Evol. 2020 Nov 3;12(11):2045-2059. doi: 10.1093/gbe/evaa201. Genome Biol Evol. 2020. PMID: 32986810 Free PMC article.

10

A combination of transcriptional and microRNA regulation improves the stability of the relative concentrations of target genes.

Riba A, Bosia C, El Baroudi M, Ollino L, Caselle M. Riba A, et al. PLoS Comput Biol. 2014 Feb 27;10(2):e1003490. doi: 10.1371/journal.pcbi.1003490. eCollection 2014 Feb. PLoS Comput Biol. 2014. PMID: 24586138 Free PMC article.

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