Rzepiela A - Search Results

1

Loss of TSC complex enhances gluconeogenesis via upregulation of Dlk1-Dio3 locus miRNAs.

Liko D, Rzepiela A, Vukojevic V, Zavolan M, Hall MN. Liko D, et al. Among authors: rzepiela a. Proc Natl Acad Sci U S A. 2020 Jan 21;117(3):1524-1532. doi: 10.1073/pnas.1918931117. Epub 2020 Jan 9. Proc Natl Acad Sci U S A. 2020. PMID: 31919282 Free PMC article.

2

Quantifying the strength of miRNA-target interactions.

Breda J, Rzepiela AJ, Gumienny R, van Nimwegen E, Zavolan M. Breda J, et al. Methods. 2015 Sep 1;85:90-99. doi: 10.1016/j.ymeth.2015.04.012. Epub 2015 Apr 16. Methods. 2015. PMID: 25892562 Free article.

3

Single-cell mRNA profiling reveals the hierarchical response of miRNA targets to miRNA induction.

Rzepiela AJ, Ghosh S, Breda J, Vina-Vilaseca A, Syed AP, Gruber AJ, Eschbach K, Beisel C, van Nimwegen E, Zavolan M. Rzepiela AJ, et al. Mol Syst Biol. 2018 Aug 27;14(8):e8266. doi: 10.15252/msb.20188266. Mol Syst Biol. 2018. PMID: 30150282 Free PMC article.

4

Corrigendum to "Quantifying the strength of miRNA-target interactions" [Methods (2015) 90-99].

Breda J, Rzepiela AJ, Gumienny R, van Nimwegen E, Zavolan M. Breda J, et al. Methods. 2016 Jul 15;104:204-205. doi: 10.1016/j.ymeth.2015.12.016. Epub 2016 Jan 13. Methods. 2016. PMID: 27372217 Free article. No abstract available.

5

High-Resolution Cryoelectron Microscopy Structure of the Cyclic Nucleotide-Modulated Potassium Channel MloK1 in a Lipid Bilayer.

Kowal J, Biyani N, Chami M, Scherer S, Rzepiela AJ, Baumgartner P, Upadhyay V, Nimigean CM, Stahlberg H. Kowal J, et al. Structure. 2018 Jan 2;26(1):20-27.e3. doi: 10.1016/j.str.2017.11.012. Epub 2017 Dec 14. Structure. 2018. PMID: 29249605 Free article.

6

Lipid packing drives the segregation of transmembrane helices into disordered lipid domains in model membranes.

Schäfer LV, de Jong DH, Holt A, Rzepiela AJ, de Vries AH, Poolman B, Killian JA, Marrink SJ. Schäfer LV, et al. Among authors: rzepiela aj. Proc Natl Acad Sci U S A. 2011 Jan 25;108(4):1343-8. doi: 10.1073/pnas.1009362108. Epub 2011 Jan 4. Proc Natl Acad Sci U S A. 2011. PMID: 21205902 Free PMC article.

7

Reconstruction of atomistic details from coarse-grained structures.

Rzepiela AJ, Schäfer LV, Goga N, Risselada HJ, De Vries AH, Marrink SJ. Rzepiela AJ, et al. J Comput Chem. 2010 Apr 30;31(6):1333-43. doi: 10.1002/jcc.21415. J Comput Chem. 2010. PMID: 20087907

8

Membrane poration by antimicrobial peptides combining atomistic and coarse-grained descriptions.

Rzepiela AJ, Sengupta D, Goga N, Marrink SJ. Rzepiela AJ, et al. Faraday Discuss. 2010;144:431-43; discussion 445-81. doi: 10.1039/b901615e. Faraday Discuss. 2010. PMID: 20158042

9

Hybrid simulations: combining atomistic and coarse-grained force fields using virtual sites.

Rzepiela AJ, Louhivuori M, Peter C, Marrink SJ. Rzepiela AJ, et al. Phys Chem Chem Phys. 2011 Jun 14;13(22):10437-48. doi: 10.1039/c0cp02981e. Epub 2011 Apr 15. Phys Chem Chem Phys. 2011. PMID: 21494747 Free article.

10

Benchmark of Schemes for Multiscale Molecular Dynamics Simulations.

Goga N, Melo MN, Rzepiela AJ, de Vries AH, Hadar A, Marrink SJ, Berendsen HJ. Goga N, et al. Among authors: rzepiela aj. J Chem Theory Comput. 2015 Apr 14;11(4):1389-98. doi: 10.1021/ct501102b. J Chem Theory Comput. 2015. PMID: 26574351

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