Tong P - Search Results

1

A pseudolikelihood approach for assessing genetic association in case-control studies with unmeasured population structure.

Chen Y, Liang KY, Tong P, Beaty TH, Barnes KC, Linda Kao WH. Chen Y, et al. Among authors: tong p. Stat Methods Med Res. 2020 Nov;29(11):3153-3165. doi: 10.1177/0962280220921212. Epub 2020 May 12. Stat Methods Med Res. 2020. PMID: 32393154

2

SIBER: systematic identification of bimodally expressed genes using RNAseq data.

Tong P, Chen Y, Su X, Coombes KR. Tong P, et al. Bioinformatics. 2013 Mar 1;29(5):605-13. doi: 10.1093/bioinformatics/bts713. Epub 2013 Jan 9. Bioinformatics. 2013. PMID: 23303507 Free PMC article.

3

integIRTy: a method to identify genes altered in cancer by accounting for multiple mechanisms of regulation using item response theory.

Tong P, Coombes KR. Tong P, et al. Bioinformatics. 2012 Nov 15;28(22):2861-9. doi: 10.1093/bioinformatics/bts561. Epub 2012 Sep 26. Bioinformatics. 2012. PMID: 23014630 Free PMC article.

4

drexplorer: A tool to explore dose-response relationships and drug-drug interactions.

Tong P, Coombes KR, Johnson FM, Byers LA, Diao L, Liu DD, Lee JJ, Heymach JV, Wang J. Tong P, et al. Bioinformatics. 2015 May 15;31(10):1692-4. doi: 10.1093/bioinformatics/btv028. Epub 2015 Jan 18. Bioinformatics. 2015. PMID: 25600946 Free PMC article.

5

Co-occurring genomic alterations define major subsets of KRAS-mutant lung adenocarcinoma with distinct biology, immune profiles, and therapeutic vulnerabilities.

Skoulidis F, Byers LA, Diao L, Papadimitrakopoulou VA, Tong P, Izzo J, Behrens C, Kadara H, Parra ER, Canales JR, Zhang J, Giri U, Gudikote J, Cortez MA, Yang C, Fan Y, Peyton M, Girard L, Coombes KR, Toniatti C, Heffernan TP, Choi M, Frampton GM, Miller V, Weinstein JN, Herbst RS, Wong KK, Zhang J, Sharma P, Mills GB, Hong WK, Minna JD, Allison JP, Futreal A, Wang J, Wistuba II, Heymach JV. Skoulidis F, et al. Among authors: tong p. Cancer Discov. 2015 Aug;5(8):860-77. doi: 10.1158/2159-8290.CD-14-1236. Epub 2015 Jun 11. Cancer Discov. 2015. PMID: 26069186 Free PMC article.

6

A Patient-Derived, Pan-Cancer EMT Signature Identifies Global Molecular Alterations and Immune Target Enrichment Following Epithelial-to-Mesenchymal Transition.

Mak MP, Tong P, Diao L, Cardnell RJ, Gibbons DL, William WN, Skoulidis F, Parra ER, Rodriguez-Canales J, Wistuba II, Heymach JV, Weinstein JN, Coombes KR, Wang J, Byers LA. Mak MP, et al. Among authors: tong p. Clin Cancer Res. 2016 Feb 1;22(3):609-20. doi: 10.1158/1078-0432.CCR-15-0876. Epub 2015 Sep 29. Clin Cancer Res. 2016. PMID: 26420858 Free PMC article.

7

Selecting Reliable mRNA Expression Measurements Across Platforms Improves Downstream Analysis.

Tong P, Diao L, Shen L, Li L, Heymach JV, Girard L, Minna JD, Coombes KR, Byers LA, Wang J. Tong P, et al. Cancer Inform. 2016 May 10;15:81-9. doi: 10.4137/CIN.S38590. eCollection 2016. Cancer Inform. 2016. PMID: 27199546 Free PMC article.

8

Differential Sensitivity Analysis for Resistant Malignancies (DISARM) Identifies Common Candidate Therapies across Platinum-Resistant Cancers.

Gay CM, Tong P, Cardnell RJ, Sen T, Su X, Ma J, Bara RO, Johnson FM, Wakefield C, Heymach JV, Wang J, Byers LA. Gay CM, et al. Among authors: tong p. Clin Cancer Res. 2019 Jan 1;25(1):346-357. doi: 10.1158/1078-0432.CCR-18-1129. Epub 2018 Sep 26. Clin Cancer Res. 2019. PMID: 30257981 Free PMC article.

9

Response envelope analysis for quantitative evaluation of drug combinations.

Du D, Chang CH, Wang Y, Tong P, Chan WK, Chiu Y, Peng B, Tan L, Weinstein JN, Lorenzi PL. Du D, et al. Among authors: tong p. Bioinformatics. 2019 Oct 1;35(19):3761-3770. doi: 10.1093/bioinformatics/btz091. Bioinformatics. 2019. PMID: 30851108 Free PMC article.

10

CAsubtype: An R Package to Identify Gene Sets Predictive of Cancer Subtypes and Clinical Outcomes.

Kong H, Tong P, Zhao X, Sun J, Li H. Kong H, et al. Among authors: tong p. Interdiscip Sci. 2018 Mar;10(1):169-175. doi: 10.1007/s12539-016-0198-z. Epub 2017 Jan 21. Interdiscip Sci. 2018. PMID: 28110480

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